Backlog

Bellow is a list of interesting projects related to science and research, that we didn’t have time to curate yet. Feel free to browse through them and make comments and suggestions!

http://wiki.cogain.org/index.php/Eye_Trackers Low – cost_eye_tracking

http://openscienceframework.org/project/4znZP/wiki/home

http://www.nitrc.org/ page that gathers info on neuroimaging tools and methods

http://home.gna.org/veusz/ – scientific plotting package
http://opencitations.net/about/ – effort to make citations publicly available and as easy to use as weblinks.

http://erkutlu.blogspot.com.es/2012/12/eeg-and-arduino-do-it-yourself-eeg-ekg.html

http://www.wired.com/wiredscience/2011/03/diy-cellphone-microscope cellphone into microscope spectrometer

http://www.ncbi.nlm.nih.gov/geo/ gene expression omnibus database

http://journal.frontiersin.org/Journal/10.3389/fninf.2014.00024/abstract – Broccoli software for fast fMRI analyses

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0086733 – smartphone brain scanner

http://paper.li/IbrahimMalick/1320890343  open source by ibrahim malick

http://www.theguardian.com/public-leaders-network/2014/apr/15/big-data-open-data-transform-government?CMP=twt_gu big data

https://code.google.com/p/arduino-v-neusci/ example on how to use arduino for visual neuroscience

http://boinc.berkeley.edu/  – the same idea from seth but generalized

http://pybossa.com/ the same idea from boinc (above) but sharing cognition

http://www.acq4.org/ neurophysiology and data analysis systems

https://about.gitlab.com/about/ – version control system for projects

http://leaflabs.com/willow – neuroscience 1000 channels array

http://scalablephysiology.org/ the page dedicated to willow

http://heywhatsthebigidea.net/projects/pi-vision-a-raspberry-pi-camera-controller/ – pivision

https://libre3d.com/category/687/Test-Equipment/listings/717/Open-Source-Water-Testing-Platform.html

http://www.peekvision.org/ – ophtamology exams with smartphones

http://www.gpugrid.net/ distributed computing

http://www.iorodeo.com/consulting open source hardware company

http://hackaday.com/2015/01/06/3d-printing-circuits-gets-rid-of-the-box-altogether/  3d print plastic and electronics together

https://synbiota.com/  electronic lab notebook

http://biojs.net/ biological data visualization tool

http://open-access.net/de_en/homepage/ portal that gathers information on open access

http://www.ohwr.org/ open hardware repository

http://schoolofdata.org/ – training citizens and the civil society to use data

http://www.openingscience.org/ – an umbrella t open scholarly data to a multitude of stakeholders

http://mozillascience.org/ – branch of the mozilla foundation dedicated to making science more transparent and reproducible

http://woodenhaptics.org/ open source haptics device

https://www.youtube.com/watch?v=Ss-9iXRUeGc Pneuflex actuators

https://sites.google.com/site/openspinmicroscopy/ Openspin microscope

http://openspim.org/Welcome_to_the_OpenSPIM_Wiki openspin microscope

http://journal.frontiersin.org/Journal/10.3389/fneng.2014.00043/abstract signal generator

http://hackaday.io/project/1395-open-source-science-tricorder arduino based gagdet with lots of sensors

https://plot.ly/feed/ plots and data online

http://littledevices.org/ small portable devices for health related tests/exams and etc

https://gnu.io/ social interaction

http://thinklab.com/how_it_works online platform for science project management

http://makezine.com/2015/03/19/ikea-farming-flat-pack-hen-house-worm-bin-beehive/ urban farming and beehives

https://www.indiegogo.com/projects/aker-print-your-urban-farm–2 fundrasing for the project above

https://shuttleworthfoundation.org/applications/ foundation for social transforming ideas

http://credit.casrai.org/about-us/ changing the way scientific contributions are measured/displayed

http://journal.frontiersin.org/article/10.3389/fneng.2015.00001/full?utm_source=newsletter&utm_medium=email&utm_campaign=Neuroscience-w15-2015 system for light stimulation and data recording for optogenetics

https://arcturus.io/

http://cmictig.cs.ucl.ac.uk/wiki/index.php/Main_Page  brain imaging software suite

https://openhatch.org/wiki/Open_Science_Projects_and_Organizations#Neuroscience_2   Open science projects for neurosciences

http://openpump.org/ open source syringe pump

http://fab.cba.mit.edu/classes/4.140/people/wildebeest/projects/final/index.html another open source pump

http://guides.teklalabs.org/c/Science_Lab_Equipment tekla labs

http://blogs.lse.ac.uk/impactofsocialsciences/2014/08/05/oer-impact-map-open-university/ open lectures and their impact

http://www.graphicsmagick.org/index.html image processing library

http://www.kinectotherapy.in/

http://www.oshwa.org/ open source hardware association page

https://www.peerageofscience.org/how-it-works/ peerage of science

http://www.linux-usb-daq.co.uk/ general IO boards for linux

https://pubpeer.com/ post review of papers

https://opensource.com/business/15/8/open-source-products-four-rules?utm_content=buffer7c7ae&utm_medium=social&utm_source=facebook.com&utm_campaign=buffer Open source for products

http://journal.frontiersin.org/article/10.3389/fnins.2015.00206/full?utm_source=newsletter&utm_medium=email&utm_campaign=Neuroscience-w33-2015 spinnaker. millisecond range modelling

http://wiki.openscienceschool.com/wiki/Tools/DI-Lambda do it yourself spectrophotometer

http://thurj.org/research/2011/01/432/ automated head fixed prep for rats

http://journal.frontiersin.org/article/10.3389/fninf.2015.00004/full?utm_source=newsletter&utm_medium=email&utm_campaign=Neuroscience-w17-2015 map reduce, scalable data analysis for ephys

www.elsevier.com/connect/the-changing-face-of-journal-metrics the changing face of journal metrics

http://www.johnstowers.co.nz/blog/2014/05/27/flymad/ fly brain altering device

https://jupyter.org/ open source notebook for over 40 programming languages

https://sites.google.com/site/neurorighter/ closed loop recording and stimulation ephys

http://www.kitware.com/opensource/opensource.html several open source software suites/libraries

https://jasp-stats.org/ a fresh way to do statistics

http://www.brain-map.org/ allen institute page with data, tools and maps

https://www.circuitlab.com/

www.123dapp.com/circuits

https://madresistor.org/box0/

https://zenodo.org/

https://ipfs.io/

The next wave in software is open adoption software

 

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4933559/pdf/1604.pdf

https://www.rs-online.com/designspark/the-teaching-lab-of-tomorrow?cm_mmc=DE-EM-_-DSN_20160822-_-DM3300-_-TTB_URL2&cid=DM3300&bid=53290840

http://www.nytimes.com/2016/06/28/technology/amazon-unveils-online-education-service-for-teachers.html?_r=5®ister=google

https://www.hackster.io/arduino

http://brainwaves.io/wp/

http://www.mkme.org/

https://outernet.is/

https://hackaday.io/project/16024-openwheel-parametric-osh-wheelstyrestracks

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0166735#sec016

https://hackaday.io/project/18643-open-source-freakin-scanning-electron-microscope  open source electron microscope

http://jn.physiology.org/content/116/2/252.long Open notebooks on ephys

http://www.instructables.com/id/Laser-Scanning-Microscope/ make a laser scanning microscope

https://github.com/maxritter/DIY-Thermocam DIY thermal camera

https://neuinfo.org/about/organization neuroscience information framework

https://publishing.aip.org/publishing/journal-highlights/how-3-d-print-your-own-sonic-tractor-beam DIY sonic tractor beam

http://www.upb.edu/en/contenido/mini-spectrometer-3d-printable-model DIY spectrometer

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857158/pdf/ac5b04153.pdf lab on a drone

http://oceanographyforeveryone.com/ page hosting hardware projects related to oceanography

https://makingscience.withgoogle.com/science-journal?lang=en google app for data collection using mobile phone sensors

http://3d.si.edu/browser smithsonian museum repository of scanned objects

https://nasa3d.arc.nasa.gov/models nasa models for 3d p nting

http://www.qtiplot.com/ – Data analysis and visualization

https://github.com/BigCorvus/Physio hacked medical device

https://mousetube.pasteur.fr/ mouse vocalization database

http://www.thinkering.de/cms/ blog on tinkering with science tool examples

 

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Open source projects for neuroscience!