New collaboration between PLOS and Open Neuroscience

We are happy to announce that a new Open Source toolkit channel went live today at
This channel is a joint collaboration from Open Neuroscience, Trend in Africa and PLOS. There you will find several open source projects related to science. They range all disciplines and comprehend both software and hardware. It is open for suggestions and interaction from the community!

Channel’s front page

new pages Jan/2017

The following projects/pages were curated and added to open neuroscience on Dec/16-Jan/17:


Allen Brain Map:

Vision Egg:

Frontiers collection on Python for Neurosciences:




On an attempt to make things even more open at and take a little bit of the publishing delay away, we’ve decided to create the backlog page.

In this page you’ll find all projects that we are planning to upload to the website but didn’t get a chance yet! This way we are not stopping the information spread, and people get to make comments about the projects before they are curated.


Companies selling open source hardware/software

Two companies have incorporated the open source philosophy into their business models and are now providing products for neuroscience released under know open source licenses:

Sanworks: After the success and demand of PulsePal, Josh Sanders founded Sanworks, a company dedicated to providing systems for neuroscience research. A brief description on the company’s website follows:

Sanworks, L.L.C. develops automated systems for Neuroscience research, and streamlines access to them through an online assembly service. Our goal is to make Neuroscience tools open, affordable and accessible. We are especially focused on embedded systems for exploring the links between brain function and behavior.

Spike Gadgets: Also dedicated to providing systems for neuroscience, Spike Gadgets is focusing at electrophysiology systems and providing a complete solution with hardware and software. Although only their software is open source, this already opens doors to a lot of interesting customization/changes. A brief description from the company’s website:

SpikeGadgets is trying something new. Our hybrid approach is to design and sell powerful hardware that interfaces with an open-source software platform supported by a large community of scientists and developers. Our goal is to support the efforts of the open-source community in a commercially-sustainable way.

One of the founders, Mattias Karlsson, was kind enough to provide a brief description of their software, which can be found here.


The Hackaday citizen prize winners are out! And FlyPi made the cut!

We live in a time of unparalleled access to technology and this has the power to make life better for everyone. Today we are excited to announce twenty spectacular builds that use access to technology to move scientific exploration within the reach of all. These are the winners of the Citizen Scientist challenge of the…

via Hackaday Prize: 20 Projects that Make Us All Citizen Scientists — Hackaday

Flypi -100$ microscope/behavioural setup!

We’ve been working in collaboration with the folks of TrendinAfrica ( to develop a cheap, yet reliable, open source microscopy system to be used by scientists and DIY biologists. It is called Flypi, since its original focus were experiments with Drosophila and it uses the Raspberry pi computer as its “brains”.
The project has been going quite well and we feel it is mature enough to gain some public attention (and hopefully adoption!) and also to enter the competition, which would help us further develop it! So please, visit the project page, share it with your networks and show us some love by giving us “skulls” @ Also check out the paper we are writing about it:

Center for Reproducible Neuroscience


The Center for reproducible Neuroscience was founded in 2015 with the aim of helping researchers make their science stand the test of time, by making it more open and reproducible (aka better science). The starting point of the center is neuroimaging, as they provide computational power, databanks for storing and sharing data and data analysis platform (to be launched in 2016), tuned to the field.

Tensor Flow, OME, e-health, Bitalino

Some updates to the website!

Google has created an open source tool box, called Tensor Flow containing their deep learning algorithms




OME is a project concerned with the creation of standard file formats, visualization, and file keeping tools for biological images.

e-health is an open source platform for real time monitoring of biosignals from patients / test subjects. Check it at interesting projects (at the bottom of the page).

Bitalino is also listed on the interesting projects page, and is similar to e-health, but more focused on prototyping and tinkering.

Open source projects for neuroscience!